Systems / Computational / Quantitative Biology and Biophysics: 

An ab initio information-theoretic approach to proteins and protein-ligand interactions (2024)
bioRxiv 2024.03.06.583646
Deep Nath, Rajdeep Kaur Grewal, Devrani Mitra and Soumen Roy*

Assessing combinatorial diversity of Aureochrome bZIPs through genome-wide screening
Cells Tissues Organs [Karger], 213, 133-146 (2024) [Invited]    bioRxiv 2022.06.05.494858
Madhurima Khamaru, Deep Nath,  Devrani Mitra* and Soumen Roy*

Network approach to mutagenesis sheds insight on phage resistance in mycobacteria
Bioinformatics [Oxford], 37, 213-220 (2021)        PDF 
Saptarshi Sinha, Sourabh Samaddar, Sujoy Das Gupta and Soumen Roy*
Summary     Popular coverage in:  Research Matters        Daily Hunt 

 Mass testing and proactiveness affect epidemic spreading [Invited]
Special issue on "Emerging Trends in Modeling and Analysis of Complex Systems"
Journal of the Indian Institute of Science, 101, 371-380 (2021)       arXiv:2008.10387 
Saptarshi Sinha, Deep Nath and Soumen Roy*

Modeling phage-bacteria dynamics
Methods in Molecular Biology, 2131, 309-327 (2020) [Springer]
Saptarshi Sinha, Rajdeep Kaur Grewal and Soumen Roy*

Residue interaction dynamics in Vaucheria aureochrome1 light-oxygen-voltage: Bridging theory and experiments
Proteins: Structure, Function, and Bioinformatics [Wiley], 88, 1660-1674 (2020) 
Anwesha Deb, Rajdeep Kaur Grewal, Soumen Roy* and Devrani Mitra*

Role of a 19S proteasome subunit - PSMD10 / Gankyrin in neurogenesis of human neuronal progenitor cells 
International Journal of Stem Cells 12, 463-473 (2019)
Indrajit Sahu, Padma Nanaware, Minal Mane,  Soumen Roy*, Prasanna Venkatraman*
 
Modeling bacteria-phage interactions and implications for phage therapy 
Advances in Applied Microbiology [Academic Press] 103, 103-141 (2018)    
Saptarshi Sinha, Rajdeep Kaur Grewal and Soumen Roy*

Dynamics of Mycobacteriophage-Mycobacterial host interaction - evidence for secondary mechanisms for host lethality
Applied and Environmental Microbiology [ASM] 82 124-133 (2016)     PDF    Supplementary Information
Sourabh Samaddar, RK Grewal, S Sinha, S Ghosh, Soumen Roy* and Sujoy Das Gupta*
Selected as article of significant interest by Editors for AEM Spotlight

Using complex networks towards information retrieval and diagnostics in multidimensional imaging
Scientific Reports [Nature] 5: 17271 (2015)     arxiv:1506.02602     PDF    
Soumya Jyoti Banerjee, Mohammad Azharuddin, Debanjan Sen, Smruti  Savale, Himadri Datta, Anjan Dasgupta and Soumen Roy*

Mapping networks of light-dark transition in LOV photoreceptors
Bioinformatics [Oxford] 31 3608-3616 (2015)    Supplementary Information
Rajdeep Kaur Grewal, Devrani Mitra and Soumen Roy*

Modeling proteins as residue interaction networks [Invited review]
Protein & peptide letters 22 923-933 (2015) 
Rajdeep Kaur Grewal and Soumen Roy*

Perspectives in systems biology
Editorial for special issue
Systems and Synthetic Biology [Springer] (2014) 8: 1-2    PDF
Soumen Roy*